Professor & HHMI Investigator
Ph.D., Cambridge University, 1986
Chromosomes are covered with chemical modifications that help control gene expression. I study this secondary genetic code - the epigenome - and how it is guided by small mobile RNAs in plants and fission yeast. Our discoveries impact plant breeding and human health, and we use this and other genomic information to improve aquatic plants as a source of bioenergy.
Epigenetic mechanisms of gene regulation—chemical and conformational changes to DNA and the chromatin that bundles it—have had an important impact on genome organization and inheritance and on cell fate. These mechanisms are conserved in eukaryotes and provide an additional layer of information superimposed on the genetic code. Robert Martienssen, a pioneer in the study of epigenetics, investigates mechanisms involved in gene regulation and stem cell fate in yeast and model plants including Arabidopsis and maize. He and his colleagues have shed light on a phenomenon called position-effect variegation, caused by inactivation of a gene positioned near densely packed chromosomal material called heterochromatin. They have discovered that small RNA molecules arising from repeating genetic sequences program that heterochromatin. Martienssen and colleagues have described a remarkable process by which “companion cells” to sperm in plant pollen grains provide them with instructions that protect sperm DNA from transposon damage. They found that some of these instructions, or epigenetic marks, could be inherited in the next generation. With collaborators in Mexico, Martienssen has also coaxed Arabidopsis, a flowering plant, to produce egg cells without meiosis, an important step toward a long-time goal of plant breeding: generating clonal offspring to perpetuate hybrid vigor. The lab has also shown that when RNA polymerase II has transcribed a stretch of DNA, the RNA interference mechanism causes the enzyme to release its hold on the DNA and fall away. This allows the replication fork to progress smoothly and the DNA strands to be copied; histone-modifying proteins, which follow right along, establish heterochromatin. Martienssen’s group also continues to work on problems related to the creation of plant-based biofuels. This year, as part of a collaborative project to generate a high-quality full genome map of the oil palm plant, Martienssen and his colleagues identified a single gene that controls the yield of oil palm trees. This discovery will increase yields and should lessen the environmental burden of oil palm production, which often threatens already endangered rainforest lands.
Zaratiegui, B. M. and Vaughn, M. W. and Irvine, D. V. and Goto, D. and Watt, S. and Bahler, J. and Arcangioli, B. and Martienssen, R. A. (2011) CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature 469(7328) pp. 112-5.
Slotkin, R. K. and Vaughn, M. and Borges, F. and Tanurdzic, M. and Becker, J. D. and Feijo, J. A. and Martienssen, R. A. (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136(3) pp. 461-72.
Irvine, D. V. and Zaratiegui, Mi. and Tolia, N. H. and Goto, D. B. and Chitwood, D. H. and Vaughn, M. W. and Joshua-Tor, L. and Martienssen, R. A. (2006) Argonaute slicing is required for heterochromatic silencing and spreading. Science 313(5790) pp. 1134-7.
Lippman, Z. and Gendrel, A. V. and Black, M. and Vaughn, M. W. and Dedhia, N. and McCombie, W. R. and Lavine, K. and Mittal, V. and May, B. and Kasschau, K. D. and Carrington, J. C. and Doerge, R. W. and Colot, V. and Martienssen, R. (2004) Role of transposable elements in heterochromatin and epigenetic control. Nature 430(6998) pp. 471-6.
Kidner, C. A. and Martienssen, R. A. (2004) Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature 428(6978) pp. 81-4.Additional materials of the author at
CSHL Institutional Repository
Focus on quiescent cells brings to light the essential role of RNA interference in transcription control
Full genome map of oil palm indicates a way to raise yields and protect rainforest
Scientists uncover mechanism by which plants inherit epigenetic modifications
New York Plant Genomics Consortium maps evolutionary relationships, gene functions for 150 species
Study reveals new role for RNA interference during chromosomal replication
CSHL-Mexican team coaxes sexually reproducing plant to brink of asexual reproduction